Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1066660	1066684	25	2 [0]	[1] 2	rutD	pyrimidine utilization protein D

TGGAACATGCTGTTGGCACCAGCAGATCATCACTGGCGCAGATGATTTGCACCGGGCAGCGGATGCGATCCGCATGGTGACTAAAGTCAG  >  NZ_CP009273/1066570‑1066659                                                                                          | tGGAACATGCTGTTGGCACCAGCAGATCATCACTGGCGCAGATGATTTGCACCGGGCAGCGGATGCGATCCGCATGGTGACTAAAGTCAg  <  1:308609/90‑1 (MQ=255) tGGAACATGCTGTTGGCACCAGCAGATCATCACTGGCGCAGATGATTTGCACCGGGCAGCGGATGCGATCCGCATGGTGACTAAAGTCAg  <  2:88301/90‑1 (MQ=255)                                                                                          | TGGAACATGCTGTTGGCACCAGCAGATCATCACTGGCGCAGATGATTTGCACCGGGCAGCGGATGCGATCCGCATGGTGACTAAAGTCAG  >  NZ_CP009273/1066570‑1066659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑