Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3448732	3448756	25	2 [1]	[0] 2	gspA	type II secretion system protein GspA

TAGAACTTCCTGTTTTAATTATTGATTATCCTTAATCATAAAA  >  NZ_CP009273/3448757‑3448799 |                                           tAGAACTTCCTGTTTTAATTATTGATTATCCTTAATCATaaaa  >  1:53280/1‑43 (MQ=255) tAGAACTTCCTGTTTTAATTATTGATTATCCTTAATCATaaaa  <  2:53280/43‑1 (MQ=255) |                                           TAGAACTTCCTGTTTTAATTATTGATTATCCTTAATCATAAAA  >  NZ_CP009273/3448757‑3448799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑