Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4272987	4272999	13	2 [0]	[1] 5	espX5	T3SS effector pentapeptide repeat protein EspX5

GCGCATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTT  >  NZ_CP009273/4272998‑4273087   |                                                                                        gcgcATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCAttttt  >  2:41416/1‑90 (MQ=255)   gcATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCata                                                 >  1:39085/1‑41 (MQ=255)   gcATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCata                                                 <  2:39085/41‑1 (MQ=255)   gcATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCAt                                 >  1:277671/1‑57 (MQ=255)   gcATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCAt                                 <  2:277671/57‑1 (MQ=255)   |                                                                                        GCGCATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTT  >  NZ_CP009273/4272998‑4273087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑