Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1126828	1126838	11	2 [0]	[1] 2	flgB	flagellar basal body rod protein FlgB

CTTAGCGCGTTGAGCGGGCAAATCAAAGGCATGATGAACGTTTTACAGAGCGGAAATTAACGGATGGCACTGCTGAATATTTTTGATATCGCCGGGTC  >  NZ_CP009273/1126831‑1126928         |                                                                                          cTTAGCGCGTTGAGCGGGCAAATCAAAGGCATGATGAACGTTTTACAGAGCGGAAATTAACGGATGGCACTGCTGAATATTTTTGATATc          >  2:308851/1‑90 (MQ=255)         gTTGAGCGGGCAAATCAAAGGCATGATGAACGTTTTACAGAGCGGAAATTAACGGATGGCACTGCTGAATATTTTTGATATCGCCGGGTc  >  2:277295/1‑90 (MQ=255)         |                                                                                          CTTAGCGCGTTGAGCGGGCAAATCAAAGGCATGATGAACGTTTTACAGAGCGGAAATTAACGGATGGCACTGCTGAATATTTTTGATATCGCCGGGTC  >  NZ_CP009273/1126831‑1126928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑