New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	4532499 =	1 (0.080)	3 (0.270)	3/150	1.0	67.5%	intergenic (+49/‑433)	fimE/fimA	type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
	?	NZ_CP009273	4532813 =	2 (0.180)					intergenic (+363/‑119)	fimE/fimA	type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA

TCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACA  >  NZ_CP009273/4532416‑4532571                                                                                    |                                                                         atgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc                                                                    >  2:334229‑M1/84‑90 (MQ=255)          aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga                                                            >  1:76479‑M1/1‑83 (MQ=255)          aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga                                                            <  2:76479‑M1/89‑7 (MQ=255)                tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag                                                     <  1:8674‑M1/90‑14 (MQ=255)                      tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat                                               >  1:328056‑M1/63‑90 (MQ=255)                        gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc                                             >  2:71557‑M1/1‑69 (MQ=255)                               taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt                                      <  2:150292‑M1/37‑1 (MQ=255)                                                      tgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata               <  1:165769‑M1/60‑1 (MQ=255)                                                      aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata               >  1:351175/1‑90 (MQ=255)                                                       gcacagttttcccccaaaagatgaaacatTTGGGGc                                                                    >  1:190296‑M1/30‑36 (MQ=255)                                                       gcacagttttcccccaaaagatgaaacatTTGGGGc                                                                    <  2:190296‑M1/7‑1 (MQ=255)                                                              aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa       <  2:316638‑M1/90‑60 (MQ=255)                                                                   aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattc  <  1:149428‑M1/90‑65 (MQ=255)                                                                                   aTTGGGGCCAttttgactcatagaggaaagcatcgc                                        <  1:52914‑M1/36‑27 (MQ=255)                                                                                   aTTGGGGCCAttttgactcatagaggaaagcatcgc                                        >  2:52914‑M1/1‑10 (MQ=255)                                                                                    |                                                                         TCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACA  >  NZ_CP009273/4532416‑4532571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.