Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1339139	1339139	1	3 [0]	[0] 4	pdeR	cyclic di‑GMP phosphodiesterase

CTCTACACCTTCGGCGATCACCTGAAGATTCAATGCCTGGGCCACAGCGACGAT  >  NZ_CP009273/1339140‑1339193 |                                                      ctctACACCTTCGGCGATCCCCTGAAGATTCAATGCCTGGGCCACAGCGACGAt  <  1:253435/54‑1 (MQ=255) ctctACACCTTCGGCGATCACCTGAAGATTCAATGCCTGGGCCACAGCGACGAt  <  1:228509/54‑1 (MQ=255) ctctACACCTTCGGCGATCACCTGAAGATTCAATGCCTGGGCCACAGCGACGAt  >  2:228509/1‑54 (MQ=255) ctctACACCTTCGGCGATCACCTGAAGATTCAATGCCTGGGCCACAGCGACGAt  >  2:253435/1‑54 (MQ=255) |                                                      CTCTACACCTTCGGCGATCACCTGAAGATTCAATGCCTGGGCCACAGCGACGAT  >  NZ_CP009273/1339140‑1339193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑