Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4241852	4241871	20	4 [0]	[1] 2	BW25113_RS20970	SopA family protein

GTGGATTCGTAGTGATGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTT  >  NZ_CP009273/4241863‑4241961          |                                                                                          gTGGATTCGTAGTGAAGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGa           >  1:275050/1‑90 (MQ=255)          tAGTGATGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCtt  <  2:299648/90‑1 (MQ=255)          |                                                                                          GTGGATTCGTAGTGATGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTT  >  NZ_CP009273/4241863‑4241961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑