| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3463508 = | 3 (0.230) | 15 (1.180) | 13/162 | 0.1 | 83.7% | coding (1181/1185 nt) | tuf | elongation factor Tu |
| ? | NZ_CP009273 | = 3577553 | NA (NA) | intergenic (+13/‑211) | BW25113_RS17830/BW25113_RS25760 | IS1‑like element IS1A family transposase/hypothetical protein | |||||
TGACAGTACGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGT > NZ_CP009273/3463419‑3463595 | gctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattac > 1:69923‑M1/90‑90 (MQ=255) gACAGTACGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGcc > 1:128679/1‑90 (MQ=255) gTACGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGa > 2:201391/1‑90 (MQ=255) tACGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGaa > 1:68329/1‑90 (MQ=255) tctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACt < 1:63990‑M1/9‑1 (MQ=255) tGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctg > 2:280523‑M1/1‑80 (MQ=255) caacaaATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgcca > 1:234363‑M1/1‑74 (MQ=255) caacaaATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgcca < 2:234363‑M1/87‑14 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCa > 1:61205‑M1/61‑90 (MQ=255) acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACg < 2:324554‑M1/33‑1 (MQ=255) cAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgccaacttactgattt < 1:201391‑M1/90‑26 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGc < 1:41268‑M1/22‑1 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGc > 2:41268‑M1/53‑74 (MQ=255) tcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACgg > 2:47078‑M1/52‑90 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGgcc < 1:368642‑M1/41‑1 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACgg < 2:319569‑M1/51‑1 (MQ=255) gaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTg < 1:339254‑M1/55‑1 (MQ=255) gaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTg < 1:255835‑M1/55‑1 (MQ=255) attcaaAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 2:84752‑M1/1‑37 (MQ=255) tatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGAcc < 2:337663‑M1/68‑1 (MQ=255) aaaCTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg > 2:172208‑M1/1‑32 (MQ=255) gttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCAt < 1:36683‑M1/77‑1 (MQ=255) tggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATcg < 1:55684‑M1/79‑1 (MQ=255) tggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATcg < 2:277925‑M1/79‑1 (MQ=255) tAATTAGCCCAGAACTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc > 1:328709‑M1/1‑17 (MQ=255) taCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGt > 2:297384‑M1/3‑90 (MQ=255) | TGACAGTACGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGT > NZ_CP009273/3463419‑3463595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |