New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3463517	4 (0.310)	9 (0.690)	8/166	0.4	69.2%	coding (1172/1185 nt)	tuf	elongation factor Tu
	?	NZ_CP009273	3576788 =	NA (NA)					coding (391/417 nt)	BW25113_RS17825	YrhA family protein

TGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTA  >  NZ_CP009273/3463438‑3463606                                                                                |                                                                                          tGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctg                                                                                 >  2:280523‑M1/1‑80 (MQ=255)       caacaaATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgcca                                                                              >  1:234363‑M1/1‑74 (MQ=255)       caacaaATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgcca                                                                              <  2:234363‑M1/87‑14 (MQ=255)           atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCa                                                                       >  1:61205‑M1/61‑90 (MQ=255)              acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACg                                                                    <  2:324554‑M1/33‑1 (MQ=255)                cAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgccaacttactgattt                                                                  <  1:201391‑M1/90‑26 (MQ=255)                   gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGc                                                                               >  2:41268‑M1/53‑74 (MQ=255)                   gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGc                                                                               <  1:41268‑M1/22‑1 (MQ=255)                    tcatcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACgg                                                              >  2:47078‑M1/52‑90 (MQ=255)                      atcgggcattatctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGgcc                                                            <  1:368642‑M1/41‑1 (MQ=255)                                atctgaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACgg                                                  <  2:319569‑M1/51‑1 (MQ=255)                                    gaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTg                                              <  1:255835‑M1/55‑1 (MQ=255)                                    gaacataaaacactatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTg                                              <  1:339254‑M1/55‑1 (MQ=255)                                            attcaaAACTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc                                      >  2:84752‑M1/1‑37 (MQ=255)                                                 tatcaataagttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGAcc                                 <  2:337663‑M1/68‑1 (MQ=255)                                                 aaaCTAATTAACGTGTAATTAGCCCAGAACTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg                                 >  2:172208‑M1/1‑32 (MQ=255)                                                          gttggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCAt                        <  1:36683‑M1/77‑1 (MQ=255)                                                            tggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATcg                      <  2:277925‑M1/79‑1 (MQ=255)                                                            tggagtcattaCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATcg                      <  1:55684‑M1/79‑1 (MQ=255)                                                                tAATTAGCCCAGAACTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc                  >  1:328709‑M1/1‑17 (MQ=255)                                                                     taCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGt             >  2:297384‑M1/3‑90 (MQ=255)                                                                          aGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATc        <  2:36683/90‑1 (MQ=38)                                                                          aGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATc        <  2:105726/90‑1 (MQ=38)                                                                                ttAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGt             <  2:264904/79‑1 (MQ=39)                                                                                ttAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGt             >  1:264904/1‑79 (MQ=39)                                                                                tggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt  >  1:300619‑M1/1‑1 (MQ=255)                                                                                tggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt  >  1:214908‑M1/1‑1 (MQ=255)                                                                                |                                                                                          TGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTA  >  NZ_CP009273/3463438‑3463606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.