Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2014237	2014335	99	2 [1]	[1] 2	fliM	flagellar motor switch protein FliM

TCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGGAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTCGC  >  NZ_CP009273/2014147‑2014285                                                                                          |                                                  tCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGGTGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATg                                                   >  2:47669/1‑90 (MQ=255)                                                  aCCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTcgc  >  1:367177/1‑90 (MQ=255)                                                                                          |                                                  TCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGGAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTCGC  >  NZ_CP009273/2014147‑2014285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑