Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2259108	2259159	52	4 [1]	[0] 3	yeiP	elongation factor P‑like protein YeiP

CACTGCCCGCGGTGCCGCTACGCTGTACAAAATGCGTTTTTCTGATGTCCGTACCGGGCTGAAAGTAGAAGAGCGTTTCAAAGGTGATGATATC  >  NZ_CP009273/2259018‑2259111                                                                                          |     cACTGCCCGCGGTGCCGCTACGCTGTACAAAATGCGTTTTTCTGATGTCCGTACCGGGCTGAAAGTAGAAGAGCGTTTCAAAGGtgatga      <  1:127781/90‑1 (MQ=255)     gCCCGCGGTGCCGCTACGCTGTACAAAATGCGTTTTTCTGATGTCCGTACCGGGCTGAAAGTAGAAGAGCGTTTCAAAGGTGATGATATc  >  2:173496/1‑90 (MQ=255)                                                 ccGTACCGGGCTGAAAGTAGAAGAGCGTTTCAAAGGtgatga      <  1:60709/42‑1 (MQ=255)                                                 ccGTACCGGGCTGAAAGTAGAAGAGCGTTTCAAAGGtgatga      >  2:60709/1‑42 (MQ=255)                                                                                          |     CACTGCCCGCGGTGCCGCTACGCTGTACAAAATGCGTTTTTCTGATGTCCGTACCGGGCTGAAAGTAGAAGAGCGTTTCAAAGGTGATGATATC  >  NZ_CP009273/2259018‑2259111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑