Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2622441	2622552	112	5 [1]	[0] 2	[BW25113_RS25940]	[BW25113_RS25940]

GAGCATTGATTCTAAGTGTCATATGAAAGTACCAATTGATATATATCAAACAAAATAACCCTGATTAATGAATTATTACGTTTATCATGTTAATTCATC  >  NZ_CP009273/2622390‑2622488                                                   |                                                 gagCATTGATTCTAAGTGTCATATGAAAGTACCAATTGATATATATcaaac                                                  >  1:24305/1‑51 (MQ=255) gagCATTGATTCTAAGTGTCATATGAAAGTACCAATTGATATATATcaaac                                                  <  2:24305/51‑1 (MQ=255)   gCATTGATTCTAAGTGTCATATGAAAGTACCAATTGATATATATcaaac                                                  >  1:263648/1‑49 (MQ=255)   gCATTGATTCTAAGTGTCATATGAAAGTACCAATTGATATATATcaaac                                                  <  2:263648/49‑1 (MQ=255)          ttCTAAGTGTCATATGAAAGTACCAATTGATATATATCAAACAAAATAACCCTGATTAATGAATTATTACGTTTATCATGTTAATtcatc  <  2:368453/90‑1 (MQ=255)                                                   |                                                 GAGCATTGATTCTAAGTGTCATATGAAAGTACCAATTGATATATATCAAACAAAATAACCCTGATTAATGAATTATTACGTTTATCATGTTAATTCATC  >  NZ_CP009273/2622390‑2622488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑