New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 287112	NA (NA)	15 (1.130)	11/168	0.2	93.8%	intergenic (‑55/‑99)	BW25113_RS01405/BW25113_RS01410	IS1‑like element IS1B family transposase/hypothetical protein
	?	NZ_CP009273	1903038 =	1 (0.080)					intergenic (‑15/‑144)	mgrB/yobH	PhoP/PhoQ regulator MgrB/YobH family protein

GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGA  >  NZ_CP009273/287028‑287194                                                                                     |                                                                                   ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAtt                                                                               >  2:344504/1‑90 (MQ=33) ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAtt                                                                               >  2:171417/1‑90 (MQ=33)    gggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTc                                                                            >  2:65753/1‑90 (MQ=38)         aGCTGATAGAACCGGCAGACACTGGAGCACCTCAAAAACCCCACCATACTCTAATTCAATAAGTTGGCAGCATCACCGAATTTTGAGcgc                                                                       <  1:319710/90‑3 (MQ=11)         aGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCCTCATACACGAAATCAGTAAGTTGGCACCATCACCGAATTTTCAcccc                                                                       <  1:28096/90‑1 (MQ=14)         aGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGccc                                                                       >  1:250708/1‑90 (MQ=255)           cTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCgg                                                                     >  2:50744/1‑90 (MQ=255)                 gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACGCTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGttt                                                               >  1:57757/1‑90 (MQ=255)                    aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCAc                                                            <  1:299947/90‑1 (MQ=255)                    aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCAc                                                            <  1:325542/90‑1 (MQ=255)                    aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCAc                                                            <  1:50744/90‑1 (MQ=255)                         aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGACCGGATGTTTCACGTAcc                                                       <  1:171417/90‑1 (MQ=255)                         aGCCACTGGAGCACCTCAAAAACACCATCATACACT‑AATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCt                                                      >  1:333836/1‑90 (MQ=255)                                     aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAatat                                           >  2:371989/1‑90 (MQ=255)                                         cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTgg                                       <  1:713/90‑1 (MQ=255)                                                acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATaa                                >  1:343605/1‑90 (MQ=255)                                                acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATaa                                >  2:127813/1‑90 (MQ=255)                                                           cTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATc                     >  2:166519/1‑90 (MQ=255)                                                                   gTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTgg                                       >  2:235440/1‑64 (MQ=255)                                                                   gTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTgg                                       <  1:235440/64‑1 (MQ=255)                                                                        ttGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGc        <  2:250708/90‑1 (MQ=255)                                                                         tGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCa       <  1:84907/90‑1 (MQ=255)                                                                         tGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCa       <  2:337268/90‑1 (MQ=255)                                                                         tGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCa       >  1:218219/1‑90 (MQ=255)                                                                           gcagcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCaga     >  1:124077/1‑90 (MQ=255)                                                                             agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTgg                                       <  1:45342/54‑1 (MQ=255)                                                                             agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTgg                                       >  2:45342/1‑54 (MQ=255)                                                                              gcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGa  <  2:169903/90‑1 (MQ=255)                                                                                     |                                                                                   GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGA  >  NZ_CP009273/287028‑287194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.