Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2102573	2102598	26	2 [0]	[0] 3	wzx	O16 family O‑antigen flippase

GAATAAAACCGGCAATTGCTATATCTGACTTTGTGTTCACAA  >  NZ_CP009273/2102531‑2102572                                          | gAATAAAACCGGCAATTGCTATATCTGACTTTGTGTTCACaa  <  1:219302/42‑1 (MQ=255) gAATAAAACCGGCAATTGCTATATCTGACTTTGTGTTCACaa  >  2:219302/1‑42 (MQ=255)                                          | GAATAAAACCGGCAATTGCTATATCTGACTTTGTGTTCACAA  >  NZ_CP009273/2102531‑2102572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑