Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2491902	2491920	19	3 [1]	[1] 2	alaC/ypdA	alanine transaminase/two‑component system sensor histidine kinase YpdA

CGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAGAACATTTTATTAATGACGTTAAA  >  NZ_CP009273/2491814‑2491903                                                                                        |   cGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAGAACATTTTATTAATGACGTTaaa  <  2:376544/90‑1 (MQ=255)                                                 tgtctgtcCAGCGTTTTAGAACATTTTATTAATGACGTTa    <  1:306658/40‑1 (MQ=255)                                                 tgtctgtcCAGCGTTTTAGAACATTTTATTAATGACGTTa    >  2:306658/1‑40 (MQ=255)                                                                                        |   CGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAGAACATTTTATTAATGACGTTAAA  >  NZ_CP009273/2491814‑2491903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑