Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2011656	2011663	8	2 [1]	[1] 3	fliJ	flagellar export protein FliJ

CCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAAACAACGTTTGC  >  NZ_CP009273/2011662‑2011751   |                                                                                        ccATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAAACAACGTTTGc  >  1:343297/1‑90 (MQ=255)   aTTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACAt                                        >  1:134254/1‑50 (MQ=255)   aTTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACAt                                        <  2:134254/50‑1 (MQ=255)   |                                                                                        CCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAAACAACGTTTGC  >  NZ_CP009273/2011662‑2011751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑