Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779433	2779435	3	2 [1]	[0] 2	BW25113_RS13825/BW25113_RS26005	tRNA‑Ile/alpha‑amylase family glycosyl hydrolase

ATATAACTTTATTACATTAGCTGAAGAGTTTTCGCATCATTATGATATC  >  NZ_CP009273/2779436‑2779484 |                                                 atatAACTTTATTACATTAGCTGAAGAGTTTTCGCATCATTATGATATc  >  1:322777/1‑49 (MQ=255) atatAACTTTATTACATTAGCTGAAGAGTTTTCGCATCATTATGATATc  <  2:322777/49‑1 (MQ=255) |                                                 ATATAACTTTATTACATTAGCTGAAGAGTTTTCGCATCATTATGATATC  >  NZ_CP009273/2779436‑2779484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑