Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1128349	1128383	35	2 [1]	[1] 3	flgE	flagellar hook protein FlgE

GACGGGTTACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGC  >  NZ_CP009273/1128377‑1128466        |                                                                                   gACGGGTTACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGc  >  2:255953/1‑90 (MQ=255)        tACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAat                               <  1:116359/54‑1 (MQ=255)        tACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAat                               >  2:116359/1‑54 (MQ=255)        |                                                                                   GACGGGTTACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGC  >  NZ_CP009273/1128377‑1128466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑