Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1225649	1225748	100	3 [1]	[0] 2	hlyE	hemolysin HlyE

GACCTGATCGAGATATTTATTATAAAGATCTAATGCTCCATCTGCGGTTTCGATTGCGTTTTTA  >  NZ_CP009273/1225749‑1225812 |                                                                gACCTGATCGAGATATTTATTATAAAGATCTAATGCTCCATCTGCGGTTTCGATTGCGTTTTTa  <  1:259669/64‑1 (MQ=255) gACCTGATCGAGATATTTATTATAAAGATCTAATGCTCCATCTGCGGTTTCGATTGCGTTTTTa  >  2:259669/1‑64 (MQ=255) |                                                                GACCTGATCGAGATATTTATTATAAAGATCTAATGCTCCATCTGCGGTTTCGATTGCGTTTTTA  >  NZ_CP009273/1225749‑1225812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑