| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 455,677 | A→T | D445V (GAT→GTT) | lon → | endopeptidase La |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 455,677 | 0 | A | T | 100.0% | 60.4 / NA | 17 | D445V (GAT→GTT) | lon | endopeptidase La |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (9/8); total (9/8) | |||||||||||
CTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGATCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGAACT > NZ_CP009273/455598‑455763 | cTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAg < 1:101697/90‑1 (MQ=255) agaTCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCg > 1:256123/1‑90 (MQ=255) tCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGAcc < 2:243249/90‑1 (MQ=255) gACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCAc < 2:157310/90‑1 (MQ=255) ccTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGa < 1:247824/90‑1 (MQ=255) ctGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCAc < 2:311546/53‑1 (MQ=255) ctGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCAc > 1:311546/1‑53 (MQ=255) gCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGttt > 2:227436/1‑90 (MQ=255) gCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTcgc > 1:380221/1‑90 (MQ=255) gCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTcgc > 2:107104/1‑90 (MQ=255) tGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGAc > 2:274379/1‑90 (MQ=255) aaGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGt > 2:74966/1‑90 (MQ=255) gTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTg < 2:260120/72‑1 (MQ=255) gTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTg > 1:260120/1‑72 (MQ=255) tGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGa < 2:256123/90‑1 (MQ=255) cTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGAAc > 1:226820/1‑90 (MQ=255) tGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGAACt < 2:280834/90‑1 (MQ=255) | CTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGATCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGAACT > NZ_CP009273/455598‑455763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |