| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 25 (1.870) | 20/168 | 0.0 | 52.1% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 23 (1.720) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
GCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGC‑GTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360019‑360193 | gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc < 2:190321/90‑1 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:140150/1‑90 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGC‑GTcc < 2:253982/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGC‑GTCCTGCCCGCCa < 1:321058/90‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACACGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGG‑GTCCGGcccccccccc > 2:369549/1‑90 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGG‑GGGCTGCcccccccccccccgc > 2:321058/1‑87 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGC‑GTCCTGCCCGCCACCCTCCGGGCCGtt < 1:227913/90‑1 (MQ=255) atAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGC‑GTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc < 1:119603/90‑1 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGG‑GGCCTGCCCCCCCCCCCCCCCGCCGTTGCTTTTCAACGTTc > 2:262926/1‑90 (MQ=21) tCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGC‑GGCCTGCCCCCCCCCCCCCCGGCCGGTGCTTCGCAACGTTCAAAACCCCCCCccgc > 1:318017/1‑90 (MQ=17) tCCCCAATTCCTGGCAGTTTATGGC‑GGGC‑GTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:209988/90‑1 (MQ=255) attaaTTCCTGGCAGTTTATGGC‑GGGCGGTCCT‑CCCCCCCCCCCCCCGGCCGCTCCTTCGCCACGTTTTAAACCCCCCCCCGCGGGtttt > 2:128809/4‑89 (MQ=2) aaTTCCTGGCCGTTTATGGC‑GGGA‑GCCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:366040/90‑1 (MQ=11) aaTTCCTGGCAGTTTATGGC‑GGGC‑GTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:140150/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGC‑GTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:78682/90‑1 (MQ=35) | GCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGC‑GTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360019‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |