New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 287112	NA (NA)	7 (0.520)	6/168	0.7	100%	intergenic (‑55/‑99)	BW25113_RS01405/BW25113_RS01410	IS1‑like element IS1B family transposase/hypothetical protein
	?	NZ_CP009273	1903038 =	0 (0.000)					intergenic (‑15/‑144)	mgrB/yobH	PhoP/PhoQ regulator MgrB/YobH family protein

CGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTG  >  NZ_CP009273/1902961‑1903126                                                                              |                                                                                         agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATg                                                                              <  1:263023‑M2/13‑1 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATg                                                                              <  2:172125‑M2/13‑1 (MQ=255)       tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTa                                                                        >  1:131502‑M2/72‑90 (MQ=255)                             acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAAc                                                  <  2:127915‑M2/41‑1 (MQ=255)                                  aaCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttc                                             >  1:188958‑M2/1‑53 (MQ=255)                                           gACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgc                                    <  2:370415‑M2/90‑47 (MQ=255)                                           atcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATg                                    >  1:34835‑M2/36‑90 (MQ=255)                                                acactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGat                               >  1:157032‑M2/31‑90 (MQ=255)                                                     aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg                          >  2:288563‑M2/26‑90 (MQ=255)                                                          tttCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataat                                      <  1:367547‑M2/73‑45 (MQ=255)                                                          tttCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataat                                      >  2:367547‑M2/1‑29 (MQ=255)                                                                     tctcCGTTTCACCCACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac          >  2:341924‑M2/1‑18 (MQ=255)                                                                             tCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg  <  2:22953‑M2/90‑81 (MQ=255)                                                                              |                                                                                         CGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTG  >  NZ_CP009273/1902961‑1903126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.