| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 455,677 | A→T | D445V (GAT→GTT) | lon → | endopeptidase La |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 455,677 | 0 | A | T | 100.0% | 47.4 / NA | 14 | D445V (GAT→GTT) | lon | endopeptidase La |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (5/9); total (5/9) | |||||||||||
ACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGATCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGAA > NZ_CP009273/455593‑455761 | aCCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCag < 1:253329/90‑1 (MQ=255) tCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTAGTTCCAGAGCAGAACg < 2:298279/90‑1 (MQ=255) tGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAg < 2:278267/90‑1 (MQ=255) aTCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGAc > 1:189022/1‑90 (MQ=255) tCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGAcc < 1:290097/90‑1 (MQ=255) gACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCAc < 1:159334/90‑1 (MQ=255) tcttctGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGaa > 1:147592/1‑90 (MQ=255) tGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACg < 1:25635/90‑1 (MQ=255) gTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGAtc > 1:93463/1‑90 (MQ=255) gATCCGGCCTCTGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGc < 2:174008/90‑1 (MQ=255) ctctGCACTGCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGAt > 1:2142/1‑90 (MQ=255) gCTTGAAGTGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTcgc < 1:261388/90‑1 (MQ=255) tGCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGa > 2:179501/1‑90 (MQ=255) gCTGGTTCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGaa < 1:141274/90‑1 (MQ=255) | ACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGATCCAGAGCAGAACGTAGCGTTCAGCGACCACTACCTGGAAGTGGATTACGATCTCAGCGACGTGATGTTTGTCGCGACGTCGAA > NZ_CP009273/455593‑455761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |