| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,393 | A→T | D6V (GAT→GTT) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,393 | 0 | A | T | 100.0% | 12.9 / NA | 6 | D6V (GAT→GTT) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (3/3); total (3/3) | |||||||||||
GGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAA > NZ_CP009273/1613331‑1613451 | gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAAAGTGAAAAATACCAGCGTTCTGTTCAATGAAATTATTCCATTggt > 2:224064/1‑89 (MQ=255) tttatCCCCTCCAGCTAATTCCTTGGCAGGGCAACTAATGTAAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTa < 1:224064/89‑1 (MQ=255) ttatCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTaa < 1:233034/90‑1 (MQ=255) gCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATgg > 1:262938/1‑90 (MQ=255) aTTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCa < 2:112534/90‑1 (MQ=255) gCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGaagaaa > 1:318080/1‑90 (MQ=255) | GGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAA > NZ_CP009273/1613331‑1613451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |