New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	15391 =	NA (NA)	31 (1.570)	25/158	0.0	84.5%	intergenic (+93/‑54)	dnaJ/BW25113_RS00080	molecular chaperone DnaJ/IS4‑like element IS421 family transposase
	?	NZ_CP009273	= 454255	6 (0.290)					intergenic (+99/‑89)	clpX/lon	ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La

CCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC  >  NZ_CP009273/15311‑15457                                                                                 |                                                                   ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCTCCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTa                                                           <  1:510125/90‑1 (MQ=255)  cTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGGACCCCCCTAAACGCTaa                                                          >  2:23405/1‑90 (MQ=255)    gCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGACTCCCCTAAACGCTAACt                                                        >  2:363785/1‑90 (MQ=255)           ggCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGt                                                 <  1:23405/90‑1 (MQ=255)              aGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtgt                                              <  1:363785/90‑1 (MQ=255)               ggCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCTAAACGCCAACTTAAGGGGtgtg                                             >  1:145161/1‑90 (MQ=255)               ggCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtgtg                                             <  1:245664/90‑1 (MQ=255)               ggCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtgtg                                             <  1:335772/90‑1 (MQ=255)                                   gCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACCCCCCCAAAAGCCAACTTAAAGGGTGTGGGGTTTTGCCTGGTattatt                         >  2:250703/1‑90 (MQ=255)                                                    gCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAACGCTAACTTAAGGGGTGTGGGATTACGCCTGGTATGATTTTAAGTGCCGATGaaat        >  1:67838/1‑88 (MQ=255)                                                          gTAAAGTGGCGGGGGGCACTCCCCCAAAAGCTAACATAAAGGGTGTGGGTTTTAGCCCGATATGATTTTAAGGGCCGCGGAATTACactc  >  2:414972/1‑90 (MQ=255)                                                                                 |                                                                   CCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC  >  NZ_CP009273/15311‑15457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.