| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4398991 = | 38 (1.830) | 3 (0.180) | 3/136 | 1.6 | 10.3% | intergenic (+79/‑101) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP009273 | 4399052 = | 21 (1.240) | intergenic (+140/‑40) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAG > NZ_CP009273/4398902‑4399057 | tGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGATAGATTGCTGACAAAAGGCGCTGTGGTCATTCCGGATGCGGCGTGCACGCCt > 2:509850/1‑90 (MQ=37) cagcagggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATc > 2:166524‑M1/86‑90 (MQ=255) agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGTCTTATc < 1:302221/90‑1 (MQ=255) agcagggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATcc > 1:621864‑M1/85‑90 (MQ=255) cagggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCgg > 2:97887‑M1/83‑90 (MQ=255) gggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGcc < 2:533419‑M1/10‑1 (MQ=255) gggcctgcactgcgtggatgccgtaaatcatttcgctcattaatatactcgttgtttacgttttgcctgatgcactacgtTTATCCGGcc > 2:166809‑M1/81‑90 (MQ=255) ggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGCCt > 1:34063‑M1/80‑90 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCgg > 2:368458‑M1/79‑86 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCgg < 1:368458‑M1/8‑1 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGc < 1:367191‑M1/9‑1 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGc > 2:367191‑M1/79‑87 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTa < 1:453997‑M1/12‑1 (MQ=255) cccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAAt > 1:459660/1‑90 (MQ=255) ctctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa > 1:96794/1‑90 (MQ=255) ctctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa > 2:482712/1‑90 (MQ=255) gcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGc < 1:587149‑M1/9‑1 (MQ=255) gcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGc > 2:587149‑M1/70‑78 (MQ=255) ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACg > 1:535597/1‑90 (MQ=255) ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACg > 2:375894/1‑90 (MQ=255) tttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGc < 2:260831/90‑1 (MQ=255) tttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGc < 1:482712/90‑1 (MQ=255) ttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa < 1:603693/90‑1 (MQ=255) tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCaa > 2:159634/1‑90 (MQ=255) agaagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTc < 1:607921/90‑1 (MQ=255) aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCaa < 2:210494/90‑1 (MQ=255) aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCaa < 2:459660/90‑1 (MQ=255) aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCaa < 1:375894/90‑1 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCgg < 1:452917/66‑1 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCgg > 2:452917/1‑66 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc < 2:501569/71‑1 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc > 1:501569/1‑71 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat > 2:175197/1‑90 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat > 2:93188/1‑90 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat > 1:393256/1‑90 (MQ=255) gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAata < 1:449106/90‑1 (MQ=255) ggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatatat < 2:146684/90‑1 (MQ=255) aTTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCaga < 2:349294/90‑1 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCaa > 1:579903/1‑70 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCaa < 2:579903/70‑1 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa > 2:59689/1‑69 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa < 1:59689/69‑1 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCa < 1:563058/85‑1 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCa > 2:563058/1‑85 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGAt > 2:249150/1‑90 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc < 2:96794/90‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc < 1:267760/90‑1 (MQ=255) cgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAt < 1:365816‑M1/59‑1 (MQ=255) cTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAt < 2:393256/90‑1 (MQ=255) ttgtttacgttttgcctgatgcactacgtTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATaa < 2:275004‑M1/61‑1 (MQ=255) acgttttgcctgatgcactacgtTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAg < 2:233205‑M1/67‑1 (MQ=255) aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAg < 2:488654/90‑1 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCaa < 1:337165/53‑1 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCaa > 2:337165/1‑53 (MQ=255) | TGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAG > NZ_CP009273/4398902‑4399057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |