| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1046001 | NA (NA) | 14 (0.670) | 11/166 | 0.6 | 82.3% | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
| ? | NZ_CP009273 | = 1903046 | 3 (0.140) | intergenic (‑23/‑136) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGC > NZ_CP009273/1902959‑1903135 | tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTgg < 1:624594‑M2/90‑3 (MQ=255) gcgcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggt < 2:259705‑M2/90‑4 (MQ=255) gcgcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTACACCCCCATCTCCGATTCACCTACCTgct < 2:390932‑M2/90‑4 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATg < 2:368404‑M2/13‑1 (MQ=255) gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaa > 1:551186‑M2/1‑85 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTc > 2:235862‑M2/76‑90 (MQ=255) agcagcAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactc > 1:467040‑M2/1‑79 (MQ=255) cagcaAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactcca > 1:555482‑M2/1‑77 (MQ=255) cagcaAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactcca > 1:84091‑M2/1‑77 (MQ=255) acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTa > 1:588232‑M2/67‑90 (MQ=255) caagcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCGCTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttatt > 1:436174‑M2/1‑70 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCg < 2:527321‑M2/31‑1 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCg < 1:53580‑M2/31‑1 (MQ=255) acacCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtg < 1:509793‑M2/90‑28 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAAc < 2:443843‑M2/41‑1 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgtttta < 2:451615‑M2/90‑33 (MQ=255) cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttat > 1:572466‑M2/1‑57 (MQ=255) aaCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttc > 2:288809‑M2/1‑53 (MQ=255) atcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATg > 2:330370‑M2/36‑90 (MQ=255) aCCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 2:140703‑M2/90‑48 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 2:286570‑M2/26‑90 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 1:193526‑M2/26‑90 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 1:207090‑M2/26‑90 (MQ=255) cagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATg > 2:384057‑M2/11‑90 (MQ=255) ccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCtt < 2:7367‑M2/88‑1 (MQ=255) ctgcctTATGTCAATATACTAGCATGCGTTAGTTAACCAGCAACCAACTATGTCGCTATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTc < 2:443459/87‑1 (MQ=255) ctggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac < 2:123412‑M2/90‑89 (MQ=255) ttATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAgcgc > 1:467332/1‑90 (MQ=255) ttATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAgcgc > 1:208435/1‑90 (MQ=255) | TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGC > NZ_CP009273/1902959‑1903135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |