| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,024,082 | 0 | A | C | 58.8% | 9.1 / 16.0 | 17 | V70G (GTT→GGT) | ygfT | formate‑dependent uric acid utilization protein YgfT |
| Reads supporting (aligned to +/- strand): ref base A (5/2); new base C (0/10); total (5/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.39e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.65e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAAGGGGCAAGCGATTGCGCATCTTTTAC‑AACCAATACATTTTTGCTCGTCCAGTTGTACGCTATCGGACTGGAAAGTCAGAGCATTAACCGGACAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCAGCCTGGCCTTTCCCTACAACGTGGATAC > NZ_CP009273/3023994‑3024169 | caaGGGGCAAGCGATTGCGCATCTTTTAT‑AACCAATACATTTTTGCTCGTCCAGTTGTACGCTATCGGACTGGAAAGTCAGAGCATTAAc < 2:580957/89‑1 (MQ=255) aTTGCGCATCTTTTAC‑AACCAATACATTTTTGCTCGTCCAGTTGTACGCTATCGGACTGGAAAGTCAGAGCATTAACCGGACAAGCCGTa > 2:222215/1‑90 (MQ=255) gcgcATTTTTAAC‑AACAAATACTTTTTTCCTCCCCCAGTTGTACGCTATGGGACGGAAAAGTAAGAGAATTACCCGGACAAGCCGTAACg < 2:507504/90‑1 (MQ=255) gaaattttAA‑ACCAAATACTTTTTTCCTCGTCCAGTTGTCCGCTATCGGACTGAAAAGTAAGAGAATTACCCGGACAAGCCGTAACGCaa < 1:837/86‑1 (MQ=255) ctttttttAC‑ACCAAATATTTTTTTGCCCGTCCATTTGTCCGCTATGGGACTGAAAAGTCAGAGAATTACCCGGACAAGCCGTAACGCaa < 1:363412/86‑1 (MQ=255) cttttttaAC‑AACAAATACTTTTTTGCTCGCCCAGTTGTCCGCTATCGGACGGAAAAGTCAGAGCATTACCCGGACAAGCCGTAACGCaa < 2:170302/86‑1 (MQ=255) tttttACAAACAAATCCTTTTTTCCCCGCCCGGTTGTCCGCTAGGGGAGGGAAAAGTAAGAGCATAACCCGGAAAAGCCGTAACGCAAgg < 2:448728/89‑1 (MQ=255) tAC‑AACAAATACTTTTTTGCTCGTCCATTTGTCCGCTATCGGACGGAAAAGTCAGAGCATTAACCGGACAAGCCGTAACGCAAGGGGCAt < 1:430405/90‑1 (MQ=255) tcaaaCCAATTCTTTTTGGCCCCTCCGTTTGAACCCTGAGGGACTGAAAAGCAAAAGCATGACCCGGACAAGCCGTAACGCAAGGGGCAt < 2:532487/87‑1 (MQ=255) cGTCCAGTTGTACGCTATCGGACTGGAAAGTCAGAGCATTAACCGGACAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCa > 1:248469/1‑90 (MQ=255) aCGCTATCGGACTGGAAAGTCAGAGCATTAACCGGACAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCa > 1:457093/1‑90 (MQ=255) aCGCTATCGGACTGGAAAGTCAGAGCATTAACCGGACAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCa > 1:612913/1‑90 (MQ=255) gggaaaaGTCAGAGCATTACCGGGAAAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCAGCCTGGCCttt < 2:506010/86‑1 (MQ=255) ggaaaaGTAAGAGCATTACCCGCAAAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCAGCCTGGCCTTTc < 2:428355/87‑1 (MQ=255) aaaGTCAGAGCATTACCCGGAAAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCAGCCTGGCCTTTCCCt < 2:437207/90‑1 (MQ=255) aaaGTAAGAGCATAACCCGGAAAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCAGCCTGGCCTTTCCCt < 2:457093/90‑1 (MQ=255) tAACCGGACAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCAGCCTGGCCTTTCCCTACAACGTGGATAc > 1:308006/1‑90 (MQ=255) | AAAGGGGCAAGCGATTGCGCATCTTTTAC‑AACCAATACATTTTTGCTCGTCCAGTTGTACGCTATCGGACTGGAAAGTCAGAGCATTAACCGGACAAGCCGTAACGCAAGGGGCATTGTTGCAGTGATGGCAGGCCACCGGATTCGCAGCCTGGCCTTTCCCTACAACGTGGATAC > NZ_CP009273/3023994‑3024169 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |