| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,393 | A→T | D6V (GAT→GTT) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,393 | 0 | A | T | 100.0% | 71.4 / NA | 21 | D6V (GAT→GTT) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (11/10); total (11/10) | |||||||||||
TCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTC > NZ_CP009273/1613306‑1613477 | tcattcatTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTc < 1:396930/90‑1 (MQ=255) ttGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAAt < 1:111934/90‑1 (MQ=255) tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCa > 2:258916/1‑90 (MQ=255) tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCa > 1:592919/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTggg > 1:22179/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTggg > 2:153474/1‑90 (MQ=255) ggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGt < 1:448996/90‑1 (MQ=255) ggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGt < 1:259130/90‑1 (MQ=255) cccTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat < 2:262301/90‑1 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTc < 1:406666/50‑1 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTc > 2:406666/1‑50 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCatat > 1:331196/1‑90 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCatat > 1:510943/1‑90 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCatat > 1:96439/1‑90 (MQ=255) gCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTa < 1:592634/80‑1 (MQ=255) gCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTa > 2:592634/1‑80 (MQ=255) cTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCagaag < 1:258916/90‑1 (MQ=255) tGCCAGGGCAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAgaagaa > 2:215406/1‑90 (MQ=255) cAACTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGcc < 2:96439/90‑1 (MQ=255) cTAATGTGAAAAGTACCAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGc > 1:27549/1‑90 (MQ=255) cAGCGTTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGtc < 1:215406/90‑1 (MQ=255) | TCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTC > NZ_CP009273/1613306‑1613477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |