New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	454243 =	2 (0.180)	9 (0.860)	8/160	0.3	82.4%	intergenic (+87/‑101)	clpX/lon	ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La
	?	NZ_CP009273	= 604803	NA (NA)					intergenic (+170/+112)	BW25113_RS03025/entD	IS4‑like element IS421 family transposase/enterobactin synthase subunit EntD

TCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGG  >  NZ_CP009273/604742‑604890                                                              |                                                                                        tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtc                                                             <  2:68158/90‑1 (MQ=255)          ggCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGa                                                    >  2:91637/1‑90 (MQ=255)                      tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAcc                                        <  2:64833/90‑1 (MQ=255)                      tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAcc                                        <  2:74063/90‑1 (MQ=255)                                       ttCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCa                                          >  1:117534/1‑71 (MQ=255)                                       ttCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCa                                          <  2:117534/71‑1 (MQ=255)                                                       gcgcTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGc       >  2:199540/1‑90 (MQ=255)                                                           ttATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAcc                                        >  1:289898/1‑53 (MQ=255)                                                           ttATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAcc                                        <  2:289898/53‑1 (MQ=255)                                                            tATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGCATGGTTAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCgg  >  2:29115/1‑90 (MQ=255)                                                              |                                                                                        TCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGG  >  NZ_CP009273/604742‑604890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.