Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1340949	1341086	138	2 [1]	[1] 2	[pdeR]–[BW25113_RS25050]	[pdeR],[BW25113_RS25050]

AGATAACTGCAATGTACGATCAGGTTCTGTGGTTTCGGTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGAC  >  NZ_CP009273/1340859‑1340982                                                                                          |                                   ataTAACTGCATTGTCCGATGGGGTTCTGGGTTTTCGGTGAAAGAAAAGCAAAAAACCCCGCTGCTTTCCGGCAACCGCCAGTATGGAtt                                    <  1:155644/88‑1 (MQ=255)                                   tCGGTGGTAGAAAAGCGAAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGAc  <  1:55293/90‑1 (MQ=255)                                                                                          |                                   AGATAACTGCAATGTACGATCAGGTTCTGTGGTTTCGGTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGAC  >  NZ_CP009273/1340859‑1340982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑