Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1424052	1424115	64	3 [1]	[1] 2	stfR	prophage tail fiber N‑terminal domain‑containing protein

CCACGAAGGCATCAGAAGCTGCGACCTCGGCCCGGGATGCGGCGGCCTCAAAAGAAGCGGCAAAATCATCAGAAACGAACGCATCATCAA  >  NZ_CP009273/1423982‑1424071                                                                      |                     ccACGAAGGCATCAGAAGCTGCGACCTCGGCCCGGGATGCGGCGGCCTCAAAAGAAGCGGCAAAATCATCAGAAACGAACGCATCATCaa  <  2:65120/90‑1 (MQ=255)                  gCTGCGACCTCGGCCCGGGATGCGGCGGCCTCAAAAGAAGCGGCAAAatcatc                      >  1:211667/1‑53 (MQ=255)                  gCTGCGACCTCGGCCCGGGATGCGGCGGCCTCAAAAGAAGCGGCAAAatcatc                      <  2:211667/53‑1 (MQ=255)                                                                      |                     CCACGAAGGCATCAGAAGCTGCGACCTCGGCCCGGGATGCGGCGGCCTCAAAAGAAGCGGCAAAATCATCAGAAACGAACGCATCATCAA  >  NZ_CP009273/1423982‑1424071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑