Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	540090	540100	11	4 [1]	[1] 2	allC	allantoate deiminase

ACCGACTGATGGCAAATGCGACTGAAAGCGTAAACTGTATCACGACGATAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTCAGCGT  >  NZ_CP009273/540000‑540094                                                                                          |      accgacTGATGGCAAATGCGACTGAAAGCGTAAACTGTATCACGACGATAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTc       <  2:311062/90‑1 (MQ=255)      cTGATGGCAAATGCGACTGAAAGCGTAAACTGTATCACGACGATAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTCAGCGt  <  2:31333/90‑1 (MQ=255)                                     gTATCACGACGATAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTc       >  1:124336/1‑54 (MQ=255)                                     gTATCACGACGATAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTc       <  2:124336/54‑1 (MQ=255)                                                                                          |      ACCGACTGATGGCAAATGCGACTGAAAGCGTAAACTGTATCACGACGATAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTCAGCGT  >  NZ_CP009273/540000‑540094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑