Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3797620	3797620	1	2 [0]	[0] 2	rfaS	LPS core biosynthesis protein RfaS

TCTGGACTGAATTTATATAAACTATCATAATCCATT  >  NZ_CP009273/3797584‑3797619                                    | tCTGGACTGAATTTATATAAACTATCATAATCCAtt  <  1:142957/36‑1 (MQ=255) tCTGGACTGAATTTATATAAACTATCATAATCCAtt  >  2:142957/1‑36 (MQ=255)                                    | TCTGGACTGAATTTATATAAACTATCATAATCCATT  >  NZ_CP009273/3797584‑3797619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑