Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1236218	1236261	44	2 [1]	[1] 3	cvrA	potassium/proton antiporter

ATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTG  >  NZ_CP009273/1236252‑1236341           |                                                                                aTTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTg  >  2:78057/1‑90 (MQ=255)           aCTCAATTGATAAACAAACTGCTCCCACGGATTTTcc                                             >  1:52266/1‑37 (MQ=255)           aCTCAATTGATAAACAAACTGCTCCCACGGATTTTcc                                             <  2:52266/37‑1 (MQ=255)           |                                                                                ATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTG  >  NZ_CP009273/1236252‑1236341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑