Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1240874	1240887	14	2 [1]	[0] 2	BW25113_RS06225	hypothetical protein

TAACAATATTCAGGTAGCAATTGATGCTTTATATAGCCAACGTCGGCGTAAATCGCCGGGTGATGAAAGTGAA  >  NZ_CP009273/1240888‑1240960 |                                                                         tAACAATATTCAGGTAGCAATTGATGCTTTATATAGCCAACGTCGGCGTAAATCGCCGGGTGATGAAAGTGaa  >  1:158163/1‑73 (MQ=255) tAACAATATTCAGGTAGCAATTGATGCTTTATATAGCCAACGTCGGCGTAAATCGCCGGGTGATGAAAGTGaa  <  2:158163/73‑1 (MQ=255) |                                                                         TAACAATATTCAGGTAGCAATTGATGCTTTATATAGCCAACGTCGGCGTAAATCGCCGGGTGATGAAAGTGAA  >  NZ_CP009273/1240888‑1240960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑