Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1290089	1290159	71	2 [0]	[1] 3	BW25113_RS06460	IS4 family transposase

CTTCTGGTTCAGCGTCAGCAGCAGGTCTTCGCTGTAAAAAAGTTTATCAAACAACGTAATAGAGTTATCCGGGATGGTGGCGAGCATGGA  >  NZ_CP009273/1290110‑1290199                                                   |                                        cTTCTGGTTCAGCGTCAGCAGCAGGTCTTCGCTGTAAAAAAGTTTATCAAACAACGTAAAAGAGTTATCCGGGTTGGGGGCGAGCATGGa  >  2:193786/1‑90 (MQ=255)                                                   acaacGTAATAGAGTTATCCGGGATGGTGGCGAGCAt     <  1:39112/37‑1 (MQ=255)                                                   acaacGTAATAGAGTTATCCGGGATGGTGGCGAGCAt     >  2:39112/1‑37 (MQ=255)                                                   |                                        CTTCTGGTTCAGCGTCAGCAGCAGGTCTTCGCTGTAAAAAAGTTTATCAAACAACGTAATAGAGTTATCCGGGATGGTGGCGAGCATGGA  >  NZ_CP009273/1290110‑1290199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑