Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1459173	1459183	11	2 [1]	[0] 2	paaY	phenylacetic acid degradation protein PaaY

AAGCAGGGTACGCATGAGTACCAGGTGCTGGTGACACGCT  >  NZ_CP009273/1459184‑1459223 |                                        aaGCAGGGTACGCATGAGTACCAGGTGCTGGTGACACGCt  >  1:108174/1‑40 (MQ=255) aaGCAGGGTACGCATGAGTACCAGGTGCTGGTGACACGCt  <  2:108174/40‑1 (MQ=255) |                                        AAGCAGGGTACGCATGAGTACCAGGTGCTGGTGACACGCT  >  NZ_CP009273/1459184‑1459223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑