Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1645983	1646002	20	2 [0]	[1] 2	BW25113_RS25635	tyrosine‑type recombinase/integrase

AACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTA  >  NZ_CP009273/1645988‑1646092                |                                                                                          aaCACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAGATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAg                 >  1:289889/1‑90 (MQ=255)                gTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTa  >  1:307918/1‑90 (MQ=255)                |                                                                                          AACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTA  >  NZ_CP009273/1645988‑1646092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑