Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2030500	2030524	25	3 [1]	[1] 3	hprS	two‑component system sensor histidine kinase HprS

GGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGATTCGATAACATTCGTTGTAGTAAAATTTTATCCGC  >  NZ_CP009273/2030515‑2030604           |                                                                                ggTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGATTCGATAACATTCGTTGTAGTAAAATTTTATCCGc  >  1:320002/1‑90 (MQ=255)           aTACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGATTc                                  >  1:170794/1‑48 (MQ=255)           aTACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGATTc                                  <  2:170794/48‑1 (MQ=255)           |                                                                                GGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGATTCGATAACATTCGTTGTAGTAAAATTTTATCCGC  >  NZ_CP009273/2030515‑2030604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑