Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2102191	2102212	22	2 [0]	[1] 2	wzx	O16 family O‑antigen flippase

CTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGTTTCTTATAG  >  NZ_CP009273/2102211‑2102302   |                                                                                          cTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGTTTCTtat    <  1:1581/90‑1 (MQ=255)   tCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGTTTCTTATAg  >  1:136322/1‑90 (MQ=255)   |                                                                                          CTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGTTTCTTATAG  >  NZ_CP009273/2102211‑2102302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑