Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2460214	2460224	11	2 [1]	[0] 2	intS	prophage integrase IntS

TGGACTGCGAGGAAAGACATCTCGGTTGGCATCGATCCTGTAAAGGCGAAAAAGGCTTCGTCTAACAACAATTCCTTTAGTGCGATTTAC  >  NZ_CP009273/2460225‑2460314 |                                                                                          tGGACTGCGAGGAAAGACATCTCGGTTGGCATCGATCCTGTAAAGGCGAAAAAGGCTTCGTCTAACAACAATTCCTTTAGTGCGATTTAc  >  1:189733/1‑90 (MQ=255) tGGACTGCGAGGAAAGACATCTCGGTTGGCATCGATCCTGTAAAGGCGAAAAAGGCTTCGTCTAACAACAATTCCTTTAGTGCGATTTAc  >  2:18631/1‑90 (MQ=255) |                                                                                          TGGACTGCGAGGAAAGACATCTCGGTTGGCATCGATCCTGTAAAGGCGAAAAAGGCTTCGTCTAACAACAATTCCTTTAGTGCGATTTAC  >  NZ_CP009273/2460225‑2460314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑