Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779693	2779731	39	2 [1]	[1] 3	BW25113_RS13825/BW25113_RS26005	tRNA‑Ile/alpha‑amylase family glycosyl hydrolase

TCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAAC  >  NZ_CP009273/2779724‑2779821         |                                                                                          tcatATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTAt          >  1:309609/1‑90 (MQ=255)         ctctACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAAc  >  1:253718/1‑90 (MQ=255)         ctctACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAAc  <  2:316302/90‑1 (MQ=255)         |                                                                                          TCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAAC  >  NZ_CP009273/2779724‑2779821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑