Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3489145	3489159	15	2 [1]	[1] 2	nirB	NADPH‑nitrite reductase large subunit

ATCACTGGCTCCCAGCGTCTGGCGATGTTTGGCGCACAGAAAGACGATCTGCCGGAGATCTGGCGTCAGCTGATTGAAGCCGGCTTCGAAAC  >  NZ_CP009273/3489158‑3489249   |                                                                                          aTCACTGGCTCCCAGCGTCTGGCGATGTTTGGCGCACAGAAAGACGATCTGCCGGAGATCTGGCGTCAGCTGATTGAAGCCGGCTTCGaa    >  1:90220/1‑90 (MQ=255)   cACTGGCTCCCAGCGTCTGGCGATGTTTGGCGCACAGAAAGACGATCTGCCGGAGATCTGGCGTCAGCTGATTGAAGCCGGCTTCGAAAc  <  1:43704/90‑1 (MQ=255)   |                                                                                          ATCACTGGCTCCCAGCGTCTGGCGATGTTTGGCGCACAGAAAGACGATCTGCCGGAGATCTGGCGTCAGCTGATTGAAGCCGGCTTCGAAAC  >  NZ_CP009273/3489158‑3489249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑