Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1799263	1799273	11	2 [1]	[1] 2	espL1/BW25113_RS09005	type III secretion system effector EspL1/hypothetical protein

GAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATAT  >  NZ_CP009273/1799173‑1799269                                                                                          |        gAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTAc         <  2:121967/90‑1 (MQ=255)        attatGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGatatat  >  1:230599/1‑90 (MQ=255)                                                                                          |        GAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATAT  >  NZ_CP009273/1799173‑1799269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑