Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3133561	3133564	4	2 [0]	[0] 4	hypA	hydrogenase maturation nickel metallochaperone HypA

TGCGCCACCGTTCCGTGGCAGACAATTTCAAAACTAAAACGGACGGCGCTCTCCTC  >  NZ_CP009273/3133505‑3133560                                                        | tGCGCCACCGTTCCGTGGCAGACAATTTCAAAACTAAAACGGACGGCGCTctcctc  <  1:62000/56‑1 (MQ=255) tGCGCCACCGTTCCGTGGCAGACAATTTCAAAACTAAAACGGACGGCGCTctcctc  >  2:62000/1‑56 (MQ=255)                                                        | TGCGCCACCGTTCCGTGGCAGACAATTTCAAAACTAAAACGGACGGCGCTCTCCTC  >  NZ_CP009273/3133505‑3133560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑