Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3646760	3646803	44	3 [1]	[1] 2	BW25113_RS18165	hypothetical protein

TTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTT  >  NZ_CP009273/3646690‑3646779                                                                      |                     ttattaACCATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCtt  >  2:151080/1‑90 (MQ=255)                       ttttACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTag                      <  1:162780/48‑1 (MQ=255)                       ttttACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTag                      >  2:162780/1‑48 (MQ=255)                                                                      |                     TTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTT  >  NZ_CP009273/3646690‑3646779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑