Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1159354	1159395	42	2 [0]	[1] 2	thiK	thiamine kinase

GCGCAATTATGGCGTCAGGTCAGGCGATGGTTTCCCTGGCTGCTGATGCTCAAAGCAGGGTGGTTTGAGTACCGCTGGCGACAAACCGGCGATCA  >  NZ_CP009273/1159391‑1159485      |                                                                                          gcgcAATTATGGCGTCAGGTCAGGCGATGGTTTCCCTGGCTGCTGATGCTCAAAGCAGGGTGGTTTGAGTACCGCTGGCGACAAACCGGc       >  2:243659/1‑90 (MQ=255)      aTTATGGCGTCAGGTCAGGCGATGGTTTCCCTGGCTGCTGATGCTCAAAGCAGGGTGGTTTGAGTACCGCTGGCGACAAACCGGCGATca  <  2:22180/90‑1 (MQ=255)      |                                                                                          GCGCAATTATGGCGTCAGGTCAGGCGATGGTTTCCCTGGCTGCTGATGCTCAAAGCAGGGTGGTTTGAGTACCGCTGGCGACAAACCGGCGATCA  >  NZ_CP009273/1159391‑1159485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑