Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1196046	1196056	11	2 [1]	[1] 3	intE	site‑specific integrase

ATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGCTTCAGCTTCGTTTGTTCCCAAA  >  NZ_CP009273/1196054‑1196143    |                                                                                       aTAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGCGTTGGCCTCACTGGCAATACCGATAGCTTCAGCTTCGTTTGTTCCCacg  >  2:191543/1‑88 (MQ=255)    gCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCg                                                      <  1:199630/35‑1 (MQ=255)    gCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCg                                                      >  2:199630/1‑35 (MQ=255)    |                                                                                       ATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGCTTCAGCTTCGTTTGTTCCCAAA  >  NZ_CP009273/1196054‑1196143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑