Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 1798971 1798999 29 2 [1] [1] 2 espL1 type III secretion system effector EspL1

TCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGT  >  NZ_CP009273/1798997‑1799089
   |                                                                                         
tCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATc     >  2:258027/1‑90 (MQ=255)
   ccATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGt  >  2:165057/1‑90 (MQ=255)
   |                                                                                         
TCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGT  >  NZ_CP009273/1798997‑1799089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: